Pruned Tree Analysis

## phyloseq-class experiment-level object
## otu_table()   OTU Table:         [ 754 taxa and 70 samples ]
## sample_data() Sample Data:       [ 70 samples by 69 sample variables ]
## tax_table()   Taxonomy Table:    [ 754 taxa by 8 taxonomic ranks ]

## phyloseq-class experiment-level object
## otu_table()   OTU Table:         [ 754 taxa and 70 samples ]
## sample_data() Sample Data:       [ 70 samples by 69 sample variables ]
## tax_table()   Taxonomy Table:    [ 754 taxa by 8 taxonomic ranks ]
## phy_tree()    Phylogenetic Tree: [ 754 tips and 752 internal nodes ]

It’s time to make a tree. Check out a helpful stack exchange page: http://unix.stackexchange.com/questions/253499/extracting-subset-from-fasta-file

Faiths PD

Taxa.Labels

Richness

Frequency

Sample Pool

Phylogeny Pool

Independent Swap

Trial Swap